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how to deal with the ccm results

Open lilinzhou opened this issue 1 year ago • 2 comments

I am currently trying to split the raw reads by chromosome, and I have a few draft assemblies based on Canu, Nextdenovo, Flye, and Necat. However, the scaffold numbers ended up differently based on draft assemblies after the ccm module, and I also didn't know the real chromosome number of this species (no reference). It would be helpful if you could tell me which scaffolding results (or how to choose) should I use, since they will be of great importance to the assembly step after the raw reads have been split based on scaffolding.

lilinzhou avatar Jun 29 '23 08:06 lilinzhou