gancao

Hello? I want to know how you get the *_mpi binaries? The document didn't declare the process of installing hh-suite with MPI support? Could you please tell me how to...

Did you solve this problem? I also met this situation. Error in cellassign(exprs_obj = sce_marker, marker_gene_info = sce_marker_mat, : nrow(rho) == G is not TRUE code: fit1 print(sce_marker) class: SingleCellExperiment...

I am sorry for this error. The correct database url is http://www.microbiome-bigdata.com/PHISDetector/static/download/DBSCAN-SWA/db.tar.gz, You can modify the python script because of our failure of uploading the latest script

The url is http://www.microbiome-bigdata.com/PHISDetector/static/download/DBSCAN-SWA/db.tar.gz on PHISDetector (http://www.microbiome-bigdata.com/PHISDetector/index/download)

Please use dbscan-swa.py on https://github.com/gancao/DBSCAN-SWA-1/tree/patch-2 >

I remove --use-gpu-relax， but the error still occurred.

nvidia-smi -L GPU 0: NVIDIA A40 (UUID: GPU-3a0904e1-20fe-becb-1241-e7f57ae80815) nvcc --version nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2021 NVIDIA Corporation Built on Sun_Mar_21_19:15:46_PDT_2021 Cuda compilation tools, release 11.3, V11.3.58...

I am sorry for the miss. I parsed protein locations using python package "Bio". The start location added 1 base automatically . Now I have updated dbscan-swa.py on https://github.com/gancao/DBSCAN-SWA-1 Thanks...

I am sorry. We didn't provide the version name of DBSCAN-SWA. This has been the lattest version of DBSCAN-SWA.

I am sorry for this problem. Could you please give some details about the errors when running you data? or you could attach the input sequence file ?