Gabriela Merino issues

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                                            Gabriela Merino

MAPQ for uniquely mapped read in end-to-end mode

Hello! We are trying to understand MAPQ calculations in end-to-end mode. More specifically, we are interested to know why Bowtie 2 reports MAPQ = 255 for uniquely mapped reads when...

Mapping very short reads with vg giraffe

Hi vg team! I'm trying to use **vg giraffe for mapping very short paired-end reads (36bp) against a pangenome**. I tried running this command line ``` > vg giraffe -M...