Cameron Gilchrist

Hi Olivier, sorry for the delay. It looks like the aligner is getting tripped up by lowercase letters in some protein translations - will add a fix for this in...

Hi Alexandre, is it possible to upload your files so I can take a look? I'm not sure exactly what's causing it, but my guess would be something to do...

Seems like it's not detecting any clusters in the file for some reason. Is it possible to upload your session file so I could take a look? In the meantime...

Hi @JordanVV, sorry for not getting onto this. Thanks to @brymerr921 this should hopefully be fixed with https://github.com/gamcil/cblaster/pull/77, now in cblaster v1.3.13. Could you see if you still have the...

Not sure what is happening unfortunately, I haven't run into this and can't reproduce it. Usually this error would come from something also interacting with the SQLite database file at...

Hi @pksun1, I think the issue is an SQL related library added with the latest release (genomicsqlite). For now you could revert to an older version which should work: `pip...

Hi @Rene-Hoover, it seems cblaster was tripping up because it expects `##sequence-region` lines that resemble: `##sequence-region ctg123 1 1497228` but the ones in your file lack the coordinates. I added...

Hi @robin84tk, which version of cblaster are you using? This is an issue that we had in an earlier version of the program, but I thought we had fixed it...

Hi @AKBode, not completely sure what happened here. Looks like it got a bad response from the NCBI and cblaster didn't catch it. When this happens, usually trying again is...

No worries :) Currently not, the extract module was written before the intermediate genes option was a thing, and I haven't gotten around to adding that yet. The second part...