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Gene cluster comparison figure generator
I am using clinker to visualize some gene clusters. I want to hide some genes so I dragged the handles from both sides. In the original orientation all looks correct:...
Hi! I met a problem when I want to compare two gff3 files: [04:44:40] INFO - PUL0611.gff [04:44:40] WARNING - Found no CDS features in ED556_00425 [PUL0611.gff] [04:44:40] WARNING -...
Hi, I am trying to generate a synteny/orthology figure for a family of genes among 4 species of interest. The genes within each of these species code for proteins belonging...
When the Genbank input file contain their CDS information within 'join(...)', clinker does not work properly (see picture). Can anyone help me with this problem? Thanks! 
Hi i am using Clinker and it gives following error- clinker P_aeruginosa_AR_0110.gbk P_aeruginosa_AR_0111.gbk P_aeruginosa_AR_455.gbk P_aeruginosa_ATCC_15692.gbk -r 4_dataforcli.txt -o out_4 -i 70 -p 4_plot.html [15:35:03] INFO - Starting clinker [15:35:03] ERROR...
Hello, I have installed clinker with conda create -n clinker -c conda-forge -c bioconda clinker-py I have try to update to v0.0.28 because I have some errors when I want...
Hello, I would like to use clinker to visualize exons as individual entities and not the whole gene as one entity. Would it be possible to implement an exon option...
Hi clinker users, I am running into some issues with the program, and I don't really understand why / how this is happening. The program seems to be mishandling some...
Can this software also be used for situations involving different domains within the same gene?
Hello, I am trying to run clinker via spyder. Could someone please help out with a simple code to run it please. If it is possible
