clinker
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Feature request: cluster granularity settings
Sometimes, it is useful to be able to differentiate between different clades or orthologous groups within a tandem array of homologous genes. See the example below, where a tandem array of homologous genes of interest (indicated in pink) comprise divergent clades / orthogroups.
It would be great if there was an option to ensure such divergent genes are clustered separately. I think the most elegant solution for this would be via fine-tuning the overall size of cluster groups (e.g. by altering some parameter in the clustering algorithm).
Thanks for your consideration