cblaster
cblaster copied to clipboard
gamcil
Find clustered hits from a BLAST search
Hi, I'm not very good with python, but I most definitely would like to use cblaster! However, I've run into an issue where I can't seem to initiate the program....
Hi, I have some questions regarding the results I obtained. I was looking for a gene cluster conserved in roughly all the genomes I have included into my local databases...
Hi, I am currently using this tool to find one gene in a metagenome (knowing that is not exactly what this tool is meant to do). The following command seems...
Hi, and thanks for this great tool. I'm currently trying to use cblaster to extract gene clusters from the NCBI database which have putative tailoring enzymes of interest. I'd like...
Hi! Thank you so much for such a useful tool. I've got an error for saving cblaterplot HTML after cblaster search. Error below was reported and the .html file is...
[13:34:17] ERROR - File parsing failed, exiting... multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call last): File "/share/apps/miniconda/anaconda3-2019.10/lib/python3.7/multiprocessing/pool.py", line 121, in worker result = (True, func(*args, **kwds)) File "/home/yye/.local/lib/python3.7/site-packages/cblaster/genome_parsers.py", line 209, in...
OSError: [Errno 113] No route to host Failed to establish a new connection: [Errno 113] No route to host',)) When I run the program, it keeps giving excpetions, I think...
On both MacOS and Windows 64 bit machines I ran into issues trying to install. Just a heads up that i uninstaleld cblaster, then after i installed/updated anaconda, scipy, numpy...
Hi, I have some issues when making the database, it can generate the three database files but the mydb.fasta file is empty. Does anyone can solve this problem? Thank you!...
