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OSError: Unable to parse NCBI response

Open GaoSpark opened this issue 1 year ago • 4 comments

GaoSpark avatar Jan 07 '24 13:01 GaoSpark

when i install the clbaster, i meet a bug : Traceback (most recent call last): File "/home/gaoyan/.local/bin/cblaster", line 8, in sys.exit(main()) File "/home/gaoyan/.local/lib/python3.9/site-packages/cblaster/main.py", line 434, in main cblaster( File "/home/gaoyan/.local/lib/python3.9/site-packages/cblaster/main.py", line 320, in cblaster rid, results = remote.search( File "/home/gaoyan/.local/lib/python3.9/site-packages/cblaster/remote.py", line 354, in search rid, rtoe = start( File "/home/gaoyan/.local/lib/python3.9/site-packages/cblaster/remote.py", line 138, in start raise IOError('Unable to parse NCBI response') OSError: Unable to parse NCBI response

Kindly resolve the issue

GaoSpark avatar Jan 07 '24 13:01 GaoSpark

I have exactly the same issue. I'm using python 3.7 and cblaster 1.3.18. Is it an error communication with the NCBI server?

FranCanalejo avatar Mar 05 '24 12:03 FranCanalejo

I'm looking for the solution of this issue too. The versions I use are: python3.7 cblaster1.318 Thanks

fma91 avatar Mar 05 '24 12:03 fma91

I had exactly the same issue, but it was due the nucleotide sequences that I used in my fasta file.

mthang avatar Aug 29 '24 08:08 mthang