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Published 20 hours ago • verified publisher icon gallantlab

Fix border coloring (cut/medial wall) in quickflat for freesurfer surfaces

Open alexhuth opened this issue 10 years ago • 3 comments

This should be relatively easy: I needed to use an ugly heuristic to find cuts in caret surfaces, but we should have the info stored about where the freesurfer cuts are.

alexhuth avatar Oct 23 '13 21:10 alexhuth

Alex, can you look into fixing this issue? I'm not sure I'll have time...

jamesgao avatar Oct 30 '13 21:10 jamesgao

Yeah I was planning on it.

On Oct 30, 2013, at 2:28 PM, James Gao wrote:

Alex, can you look into fixing this issue? I'm not sure I'll have time...

— Reply to this email directly or view it on GitHub.

alexhuth avatar Oct 30 '13 21:10 alexhuth

Ok, the blender cut file is now saved in filestore/subject/anatomicals/cutsurf[hemi=lh,name=flatten].blend. You can check how to grab the edge membership from blender.blendlib.save_patch. I suspect we should put the edge list generation directly into freesurfer.import_flat, since that's when we'll have direct access to everything. In any case, I'm demoting this to post-release, since I don't think we'll have enough time to fix this up...

jamesgao avatar Nov 05 '13 03:11 jamesgao