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Increase memory for Mothur tools

Open jennaj opened this issue 8 years ago • 2 comments

Use case: https://biostar.usegalaxy.org/p/23685/#25087

jennaj avatar Oct 10 '17 17:10 jennaj

There are too many mothur tools to do this easily and it would be a hit to our throughput if we just did it for all of them. However, we should at least consider that a fair number of them use $GALAXY_SLOTS (and currently all of them are configured to run with only 1 slot). Ultimately I think there are two things that need to be done:

  1. Convert our daily memory limit report to a graph in stats
  2. Determine how much memory tools actually need with galaxyproject/galaxy#4862

natefoo avatar Feb 23 '18 16:02 natefoo

As of 2018-06-01 we are now collecting max memory usage with the cgroup metric plugin. We should have enough data to start making some decisions about this, and other tools, within a few weeks.

@nekrut: I'd propose dropping this from the fixathon based on the reason above.

natefoo avatar Jun 04 '18 14:06 natefoo