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Published 20 hours ago • verified publisher icon galaxyproject

set up tool testing against Main

Open martenson opened this issue 7 years ago • 2 comments

I think this is now possible? ping @jmchilton

martenson avatar Jun 04 '18 16:06 martenson

Yes - it can be done stand alone for one off tools with galaxy-lib:

pip install galaxy-lib
galaxy-tool-test --help

Or in batch for all tools or as tools are installed with ephemeris:

https://github.com/galaxyproject/ephemeris/pull/81

jmchilton avatar Jun 04 '18 16:06 jmchilton

A bit more info, you have to run this from somewhere that has access to the tools on disk and the absolute paths as known by the server must match. So for usegalaxy.org this means one of our TACC VMs. Also, for the time being, an admin API key is required. Then you can do e.g.:

pip install galaxy-lib requests
galaxy-tool-test -u https://usegalaxy.org/ -a c0ffee -k deadbeef -t toolshed.g2.bx.psu.edu/repos/devteam/cummerbund/cummeRbund --tool-version 2.16.0 --verbose

natefoo avatar Jun 04 '18 18:06 natefoo