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Published 20 hours ago • verified publisher icon galaxyproject

Bug fix: update version of BWA-MEM in Hi-C workflow to avoid fatal index error

Open jennaj opened this issue 5 months ago • 1 comments

Ref workflow: https://training.galaxyproject.org/training-material/topics/epigenetics/tutorials/hicexplorer/workflows/ Ref IDC feedback: https://github.com/galaxyproject/idc/issues/53 Ref reported at https://help.galaxyproject.org/t/convert-galaxy-output-hic-file-to-hic-file-for-use-on-ucsc-genome-browser/12833/4

Workflow fails at BWA-MEM step when accessing dm3 index.

Workaround for end-users

  1. Load the workflow into Galaxy
  2. Open the workflow in the Editor
  3. Update BWA-MEM to the latest tool version
  4. Save, then execute

jennaj avatar Sep 03 '24 19:09 jennaj