galaxyproject
Tutorial added to ecology folder: "Visualization of Climate Data using NetCDF Xarray Map Plotting"
Also added a snippet in faqs section, as I didnot find a snippet for adding 'remote' files. The path is " faqs/galaxy/datasets_import_from_remote_files.md "
Okay..Thanks
On Wed, Jun 8, 2022, 02:13 Anne Fouilloux @.***> wrote:
@.**** commented on this pull request.
In topics/ecology/tutorials/x-array-map-plot/tutorial.md https://github.com/galaxyproject/training-material/pull/3481#discussion_r891692272 :
+> {: .comment} +> +> +{: .hands_on}
+> ### {% icon question %} Questions +> +> 1. What are the different kinds of projections and colormaps that can be used? +> +> > ### {% icon solution %} Solution +> > +> > 1.There are many projections which can be used in the
NetCDF xarray map plottingtool. Find here a list of valid projections. Different projections have different purposes and need to be carefully chosen. Follow this sheet to find the syntax for projections. +> > +>> When it comes to conveying the correct information, through visualisation, colors play a major role. Suppose you want to display a cold region, its an obvious practice of using cooler tones such as ablue. Thus it is important to understand the choices we have. Find the complete documentation of ColorMaps available hereMake the changes in the tutorial. We will update the workflow later.
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Okay...I'll do the needful.
On Thu, Jun 9, 2022, 23:36 Anne Fouilloux @.***> wrote:
@.**** commented on this pull request.
In topics/ecology/tutorials/x-array-map-plot/tutorial.md https://github.com/galaxyproject/training-material/pull/3481#discussion_r893809952 :
+> > > - colormap : jet
+> > >
As far as I know jet is not a colorblind friendly colormap. For Earth Science, we usually recommend to use https://www.fabiocrameri.ch/colourmaps/ which I think are available in the xarray map tool.
In topics/ecology/tutorials/x-array-map-plot/tutorial.md https://github.com/galaxyproject/training-material/pull/3481#discussion_r893813143 :
+> ### {% icon hands_on %} Hands-on: Data upload
+>
+> 1. Create a new history for this tutorial. Name it as per your choice. My suggestions : ECMWF_Reanalysis.
+>
+>
+> {% snippet faqs/galaxy/datasets_import_from_remote_files.md %}
+>
+> 2. Import the files from
+> the remote files
+> ```
+> (
Upload Data->Choose remote files->ECMWF ERA5 Reanalysis> ->2022->05->data->air_temperature_at_2_metres.nc)+> ```
+>
+> 3. Check that the datatype of uploaded data is netCDF.
+>
+> {% snippet faqs/galaxy/datasets_change_datatype.md datatype="datatypes" %}
⬇️ Suggested change
-> {% snippet faqs/galaxy/datasets_change_datatype.md datatype="datatypes" %}
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Hi, I work with Yvan Le bras on galaxy ecology, I just try out your tutorial, It is really nice ! I can do the review if you add me.
@Marie59 we can add you, that's not a problem. But you can review anything even if you are not in any team.
@annefou yes I had time to look at it. It's great ! but I don't find the access to make a review.
@annefou yes I had time to look at it. It's great ! but I don't find the access to make a review.
You can start the review from the "Files" tab e.g. https://github.com/galaxyproject/training-material/pull/3481/files from there, click on review and approve/comment accordingly. Once you are happy with the final version, you can approve it to be published (click on approve). Many thanks.
Merging is blocked, Is it because we need a review from galaxyproject/training-ecology ?
Thanks a lot! Just a reminder that you are always welcome to add a news post about new tutorials on the GTN, for a bit more visibility on the homepage etc :)
