Added Cami Opal - A tool for evaluating taxonomic metagenome profilers

[Albert-Ber]

Tool details for Cami Opal

• Name: Cami Opal
• Description: A tool to assess taxonomic metagenome profilers, predicting and evaluating the presence and relative abundance of microorganisms in microbial community DNA samples using metrics like Unifrac error and L1-norm error, and visual representations for these data.
• Homepage: Cami Opal
• License: License

Checklist for submission

FOR CONTRIBUTOR:

• [x] - I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
• [x] - License permits unrestricted use (educational + commercial)
• [x] - This PR adds a new tool or tool collection
• [ ] - This PR updates an existing tool or tool collection
• [ ] - This PR does something else (explain below)

I look forward to any feedback and thank you for your consideration.

[paulzierep]

Some comments inline.

Out of interest: What is the difference or connection to https://github.com/galaxyproject/tools-iuc/tree/main/tools/cami_amber

amber is the cami binning evaluation tool (you need to provide a gold standard bin assignment / and optionally taxonomy for each bin) - so for DAS TOOL or other binners, opal is the cami evaluation tool for taxonomic composition - so Kraken2 / MetaPhlan ... in theory OPAL should also work for amplicon data (in terms of taxonomic assignment benchmarking) ... another thing to look into ....

[ghost]

I apologize for the confusion caused by the multiple commits in this pull request. I have addressed the issues and made the necessary adjustments to the code. Please take another look and provide any further feedback.

Thank you for your assistance!

Best regards

[paulzierep]

Can you add one test with multiple samples as input ?