galaxyproject
Updating tools/hybpiper from version 2.1.6 to 2.3.0
Hello! This is an automated update of the following tool: tools/hybpiper. I created this PR because I think the tool's main dependency is out of date, i.e. there is a newer version available through conda.
I have updated tools/hybpiper from version 2.1.6 to 2.1.7.
Project home page: https://github.com/mossmatters/HybPiper/releases
For any comments, queries or criticism about the bot, not related to the tool being updated in this PR, please create an issue here.
Planemo lint throws below error. @TomHarrop do you have some inputs regarding this issue?
.. ERROR: Invalid XML found in file: hybpiper.xml. Errors [/tmp/tmpc4miyw96:199:0:ERROR:SCHEMASV:SCHEMAV_ELEMENT_CONTENT: Element 'actions': This element is not expected. Expected is one of ( data, discover_datasets, filter ).
/tmp/tmpc4miyw96:204:0:ERROR:SCHEMASV:SCHEMAV_ELEMENT_CONTENT: Element 'actions': This element is not expected. Expected is one of ( data, discover_datasets, filter ).]
The wrapper has two action directives. The only thing I can see is that they are under collection > data tag sets rather than plain data.
They are just for the column names so we could remove them?
@TomHarrop can you test if the action works, if the columns names are changed. If so we need to extend the schema.xsd
@bgruening The current action works and the column names haven't been changed in this version.
Or did you want me to try manually changing the names in the output and seeing if the action works? Sorry if I misunderstood :grimacing:
There are new updates, they have been integrated to the PR, check the file diff.
There are new updates, they have been integrated to the PR, check the file diff.
There are new updates, they have been integrated to the PR, check the file diff.
There are new updates, they have been integrated to the PR, check the file diff.
There are new updates, they have been integrated to the PR, check the file diff.