Minimap2 option

[aabaricalla]

Hi there!! I would like to know if there is any chance to add the following option to the "advanced output options" in Minimap2 (version >= 2.17). Minimap2 has an internal option " --sam-hit-only " that retrieves only the mapped reads to a reference, avoiding the minimap2 and filter tool (e.g. Samtools -F 4) 2-step process, with their respective disk space and time saved.