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source manifest seems to be mandatory for data_manager_ncbi_fcs_gx_database_downloader

Open microfuge opened this issue 10 months ago • 1 comments

Hi,

I am trying to run the tool data_manager_ncbi_fcs_gx_database_downloader in our local instance, but it fails when the source manifest is not specified

2024-04-01_17-18

 File "/usr/local/lib/python3.12/subprocess.py", line 571, in run
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['sync_files.py', '--mft', '', '--dir', '<path>/dataset_3d102f4d-a51d-4e76-a830-d270d136e515_files', 'get']' returned non-zero exit status 1.

But providing the manifest as https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/FCS/database/latest/all.manifest , it seems to run. Thanks!

microfuge avatar Apr 01 '24 15:04 microfuge