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Annovar produces green empty dataset when output set to VCF

Open jennaj opened this issue 9 years ago • 0 comments

Details reported in dataset info field:

Log: tool progress Log: tool progress Unknown option: vcfinput Usage: table_annovar.pl [arguments]

Optional arguments:
       -h, --help                      print help message
       -m, --man     

Executing the same exact job with tabular output is successful.

Modification was added here: https://github.com/galaxyproject/tools-devteam/pull/109

Where using "vcfinput" versus "vcfoutput" was discussed.

Reported by: https://biostar.usegalaxy.org/p/15686/

jennaj avatar Jan 20 '16 16:01 jennaj