galaxy
galaxy copied to clipboard
Add datatype definition for AGP assemblies
This adds support for the "A Golden Path" 2.0 assembly file format created by NCBI, as requested at the VGP meeting earlier this week.
How to test the changes?
(Select all options that apply)
- [x] I've included appropriate unit tests.
License
- [x] I agree to license these contributions under Galaxy's current license.
- [x] I agree to allow the Galaxy committers to license these and all my past contributions to the core galaxy codebase under the MIT license. If this condition is an issue, uncheck and just let us know why with an e-mail to [email protected].
It's tailing @davebx ... maybe a pure subclass datatype is enough. Do we expect many upload of that type that we need a sniffer?
@bgruening I have a fix for the upload datatype test on my local branch, and I'm also almost done with a data provider for the datatype.
Thanks for the feedback, @davelopez, this type annotation stuff is new to me.
@davebx @mvdbeek would it be possible to get this into the next release. Usually that is ok for normal data types, this touches a little bit more.
Is it already finished? @davebx
Should we apply this to 21.09? Merge is dev and backport?
@davebx can you get this into 21.09?
We would need this for the Biohackathon. @davebx any change to get this fixed today?
Seems that this is already in https://github.com/galaxyproject/galaxy/pull/12891