galaxy-helm
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galaxyproject
Minimal setup required to run Galaxy under Kubernetes
Update the galaxy-cvmfs-csi that uses the latest cvmfs-csi that resolves problems with the nodeplugin automount. Note that the cvmfs-csi is now deployed to an oci: repository which requires Helm>=3.8
The `probedb.py` script that is used for the `livenessProbe` (and others) lives in the `/tmp` directory, so eventually the tmp cleanup job to be added in #448 will break the...
This is not meant to be merged, but a useful workaround until we figure out how to automate the process of finding combinations of tools not in biocontainers. Having a...
Hello, I am trying to install the galaxy-helm chart and then deploy it in Kubernetes cluster but facing some problems. I followed what is written on the repository to install....
A `nodeSelector` is defined at the top of the chart that is applied to all handlers if/when it is defined. We should allow users to specify a `nodeSelector` for each...
From @mvdbeek on: https://matrix.to/#/!rfLDbcWEWZapZrujix:gitter.im/$f-E-Kl-Cumt4tPAajzrka83yHLSrmVM7IbDkTQjwDQA?via=gitter.im&via=matrix.org > we're using https://github.com/galaxyproject/usegalaxy-playbook/blob/5be97742d688a5b65762bd13064a9484f77f6671/env/main/group_vars/galaxyjobservers.yml#L44C11-L44C11 for that reason. I spent a good amount of time looking at this and could confirm a memory leak in the asyncio...
This one is a tricky one. Most "base" tools normally work with the same galaxy container, however the Expression tool parse_parameter fails because the container seems to lack node or...
Removes the template. Ensure it is no longer needed before merging. Mutually exlusive with #440. Closes #439
We seem to have a bit of a mismatch in cvmfs cache name handling. The upstream chart uses [cvmfs-alien-cache](https://github.com/cvmfs-contrib/cvmfs-csi/blob/f1b4983caeb767ea85f8b041ac1ab284b4e9251f/deployments/helm/cvmfs-csi/values.yaml#L47) And out chart uses [{{ .Release.Name }}-cvmfs-alien-cache-pvc](https://github.com/CloudVE/galaxy-cvmfs-csi-helm/blob/a75a195396710bfc50dab3fb227330dea3a0c3a2/galaxy-cvmfs-csi/values.yaml#L36). The mismatch causes the...
When tried a clean install the galaxy using the chart from both the GitHub repo and the packaged chart repo, the helm would report: ``` Error: INSTALLATION FAILED: failed post-install:...
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Minimal setup required to run Galaxy under Kubernetes