bioblend
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galaxyproject
A Python library for interacting with the Galaxy API
This PR adds the ability for the install_tool_dependency to use the container_resolvers resolver, so that singularity (and other containers) can be downloaded by Galaxy on request of this method. If...
It would be good to add filtering for these methods, e.g. for history_id.
Usage example: ``` from bioblend import galaxy gi = galaxy.GalaxyInstance(url=galaxy_url, key=api_key) content = gi.libraries.show_library(library_id=library_id, folder_id=folder, contents=True, types=['dataset', 'folder']) ```
extracted retry logic from `_get` into a `retry` method. - untested (even locally) just want to discuss implementation - should retry be `_retry`? - renames existing methods. Should the old...
import_history_from_url works perfectly, from_path is currently failing with some awful galaxy error ``` 2 bytes in 89 msecs (HTTP/1.1 200) 2 headers in 95 bytes (1 switches on core 1)...
Let's try and document missing API endpoints (located https://github.com/galaxyproject/galaxy/tree/dev/lib/galaxy/webapps/galaxy/api) in this issue. (Not that we need to implement everything, but so the information is available.) ping @beatrizserrano
> Implement an API for “what has been done with this dataset”. This is tracked but not exposed currently. suggested by @bgruening here: https://github.com/usegalaxy-eu/issues/issues/265. It would need to be implemented...
* [ ] extend Galaxy library API to not recursivly return __all__ files of a library * [ ] extend bioblend to take additional filter parameters * [ ] extend...
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A Python library for interacting with the Galaxy API