MMSplice_MTSplice
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BUG: Colab notebook is broken
Description
Your provided Colab notebook is not working (anymore?).
What I Did
I just tried to execute the in your README-file provided Colab notebook: https://colab.research.google.com/drive/1Kw5rHMXaxXXsmE3WecxbXyGQJma80Eq6#scrollTo=gevQvR5TqTXI
As soon as the importing cell is reached, the notebook crashes:
from mmsplice.vcf_dataloader import SplicingVCFDataloader
from mmsplice import MMSplice, predict_all_table, predict_save
from mmsplice.utils import max_varEff
--> Output:
WARNING:kipoi_utils.external.related.mixins:Unrecognized fields for DataLoaderDescription: {'postprocessing'}. Available fields are {'args', 'output_schema', 'path', 'type', 'info', 'defined_as', 'dependencies', 'writers'}
WARNING:kipoi_utils.external.related.mixins:Unrecognized fields for DataLoaderDescription: {'postprocessing'}. Available fields are {'args', 'output_schema', 'path', 'type', 'info', 'defined_as', 'dependencies', 'writers'}
WARNING:kipoi_utils.external.related.mixins:Unrecognized fields for DataLoaderDescription: {'postprocessing'}. Available fields are {'args', 'output_schema', 'path', 'type', 'info', 'defined_as', 'dependencies', 'writers'}
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
[<ipython-input-16-9491026dc097>](https://localhost:8080/#) in <cell line: 1>()
----> 1 from mmsplice.vcf_dataloader import SplicingVCFDataloader
2 from mmsplice import MMSplice, predict_all_table, predict_save
3 from mmsplice.utils import max_varEff
14 frames
[/usr/local/lib/python3.10/dist-packages/numpy/testing/_private/utils.py](https://localhost:8080/#) in <module>
55 IS_PYSTON = hasattr(sys, "pyston_version_info")
56 HAS_REFCOUNT = getattr(sys, 'getrefcount', None) is not None and not IS_PYSTON
---> 57 HAS_LAPACK64 = numpy.linalg._umath_linalg._ilp64
58
59 _OLD_PROMOTION = lambda: np._get_promotion_state() == 'legacy'
AttributeError: module 'numpy.linalg._umath_linalg' has no attribute '_ilp64'