MMSplice_MTSplice

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When I tried to use MMSplice plugin, it comes with error message: ``` running code: vep -i ~/data/in.vcf.gz --vcf --no_stats -o ~/data/out.vcf --cache --plugin MMSplice ``` ``` 2022-04-12 17:44:48.311714: W...

zyh4482

* MMSplice version: 2.3.0 * Python version: 3.9.7 * Operating System: Ubuntu 20.04.3 LTS ### Description Running mmsplice on a GPU-enabled machine is very slow. I have a NVIDIA RTX...

dagap

Bumps [pip](https://github.com/pypa/pip) from 9.0.1 to 21.1. Changelog Sourced from pip's changelog. 21.1 (2021-04-24) Process Start installation scheme migration from distutils to sysconfig. A warning is implemented to detect differences between...

dependabot[bot]

Conda package for MMsplice

1

It would be nice to have MMsplice as a single Conda package. I have attempted to make such integration some days ago. Unfortunately I couldn't resolve all the issues with...

bioinfo-K1

Identifying the predicted types of splicing events

2

Hi, thanks for developing and maintaining this project. I would like to classify the predicted impact based on the type of AS event which is promoted or suppressed due to...

bioinfo-K1

"stop iteration" trouble

2

Hi, I'm trying to run MMSplice using the google colab notebook online. For some reason, I wasn't able to download MMSplice from kipoi directly in my computer... maybe it was...

rominageysels

* MMSplice version: * Python version: * Operating System: ### Description Describe what you were trying to get done. Tell us what happened, what went wrong, and what you expected...

Eyulaochen

Bump wheel from 0.30.0 to 0.38.1

1

Bumps [wheel](https://github.com/pypa/wheel) from 0.30.0 to 0.38.1. Changelog Sourced from wheel's changelog. Release Notes UNRELEASED Updated vendored packaging to 22.0 0.38.4 (2022-11-09) Fixed PKG-INFO conversion in bdist_wheel mangling UTF-8 header values...

dependabot[bot]

Hello, Thanks for putting together these tools and the associated repo. I was looking at trying to train the TSplice model on different sets of celltype specific splicing data, analogous...

dbogdano

How to interpret tissue specific results

1

Hi, thank you for this tool, very interesting!! I just want to know how to interpret tissue specifc results, since I don't find any documentation. Thank you so much!

AndreaG5