Ben Liesfeld
Ben Liesfeld
Have you been able to apply your workaround successfully, @haochenz96? I see the same issue in my data. However, your workaround does not work for me. I am looking at...
Unfortunately, the `-L` option does not change the result. I am attaching a small test case with three Indels that should be called. [OPS-3885.zip](https://github.com/samtools/bcftools/files/9923489/OPS-3885.zip)
You are absolutely right, when simply calling any variants in the data, the Indels (or most of them) are correctly called. However, this issue is about the (forced) genotyping at...
Sorry, I honestly thought the original issues would be the same as mine because the command line options were similar. I did not notice the two AD values of the...
It has been 19 months since this was raised. Why is gp3 still not fully supported by CloudFormation?
Apologies for my ignorance - what has to be done such that the bioconda recipe build job succeeds? https://github.com/bioconda/bioconda-recipes/pull/47204
Someone seems to have pushed it through. The docker build succeeded, too. All good from my point of view now.
Hi @xiao-chen-xc, Do you have any info on a timeline when to expect the next release? Unfortunately, the issue renders the output quite unusable for downstream analysis and benchmarking.
Hi @xiao-chen-xc, I can confirm the issue has been solved. Thank you!
Hi, these are the steps to reproduce the issue: ### Create a small contig from hg38. This was my `region.bed` file. ``` chr13 31453404 33401170 ``` I used the helper...