Unmatched reads with barcodes

[kabilov]

Dear colleagues, Thank you for the useful and fast software. I have the following question:

Would it be possible to add a selective --output-types option specifically for unmatched reads? Sometimes it’s necessary to analyze these unidentified barcodes, but the information gets lost.

Currently, the --output-types option sets the output structure for both matched reads — where barcodes are no longer needed — and unmatched reads, where we still need to investigate the barcodes.

[nh13]

@kabilov that's a really good suggestion. For our future self, here is where a different output types could be specified in the code