[feature] Add a tool to get percentage of bases falling in each interval by name.

[jacarey]

Currently this expects single ended reads or paired end template reads to be full enclosed within an interval by name in order for it to be counted for that interval.

[codecov-commenter]

Codecov Report

Merging #627 into master will increase coverage by 0.00%. The diff coverage is 96.38%.

@@           Coverage Diff           @@
##           master     #627   +/-   ##
=======================================
  Coverage   95.60%   95.61%           
=======================================
  Files         113      114    +1     
  Lines        6418     6501   +83     
  Branches      429      428    -1     
=======================================
+ Hits         6136     6216   +80     
- Misses        282      285    +3     

Impacted Files	Coverage Δ
...ulcrumgenomics/rnaseq/AnnotateByIntervalList.scala	96.38% <96.38%> (ø)

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