FU

version 3.0.8 docker: etraining error

2

Good morning, I was trying to switch to the newest version of Braker (v.3.0.8) using the docker container but the pipeline fails at the Etraining step: `ERROR in file /opt/BRAKER/scripts/braker.pl...

error, file not found: option --f1 prothint/prothint.gff

4

Hello, I am annotating some vertebrate genomes using BRAKER3. I got quite good results on the first genome, but now with a related species' genome I am running into the...

ModuleNotFoundError: No module named 'datrie'

1

Hello, Thanks for creating this pipeline! Unofrtunately, I have issues getting it to run on HPC environment (Slurm). Snakemake scripts are unable to find packages that were installed using conda:...

**Is your feature request related to a problem? Please describe.** I have been trying to use **agat_sp_extract_sequences.pl** to extract all CDS over several transcripts of a single gene, but as...

Constrained optimization failed, since a starting point within the domain specified for the variables couldn't be found. Failed constraint:relax.ge.omega2

9

Dear Hyphy Team, Thanks for developing and maintaining this great set of tools! I've been trying to run RELAX on ~14k ortholog alignments, from 6 species. I installed the newest...