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Hi! `Could not locate command line parameters file: /home/uesseler/miniconda3/pkgs/augustus-3.4.0-pl5321h877ab46_5/config/parameters/aug_cmdln_parameters.json. ` I've added this file now to the augustus config directory and running to check if it works now

Thanks for the quick reply! Before BRAKER3 was released I was doing the BRAKER1+2 + TSEBRA with prefbraker1.cfg. Here I had the problem (with all my genomes), that the BUSCO...

Supplying more RNA evidence "fixed" the problem, in the sense that GeneMark-ETP does not fail anymore and I get better end results. Thanks for your help !

Hello! I think I ran into a similar problem as the OP with wanting to use mutliple values for this command. I want to filter my GFF file according to...

@Juke34 Awesome, looking forward to it :)