Fritz Sedlazeck

Hi Wendy, I am just coming through by chance since I am looking for an answer for my problem:). Anyway I have developed a method to merge SV calls very...

It looks like a problem wiht the GPU drivers (OpenCL) to me. Maybe there is an issue with libaries ? Thanks Fritz

Thanks Fritz

Hi Hermann, thanks for digging in. I think that comment was left over from the GPU code.... Thanks for looking at this. Fritz

Thanks. yes its been a while since we did some changes on the code.. Cheers Fritz

Your command cannot work like this. You are piping Sam output into the sort command. I would do it stepwise to see if the mapping is a problem or the...

could you send me the sam file with just the header and the read? This is very strange... never saw something like this. Thanks Fritz

true sorry. Please send it to me : [email protected] This should just be a small file. I want to see if there is something going on with the naming of...

samtools view -H HK1.paired.sort.bam > my.sam samtools view HK1.paired.sort.bam | grep 589897414 >> my.sam yeah feel free to just post / upload a txt file. Thanks Fritz

Did you compile it from the source code?