Fritz Sedlazeck

yeah this is also always something that bothered me... we have evidence in these SV but it does not amount to a 0/1 ... There are multiple factors for this.....

Hi @AJ211 , yes right now its similar to SURVIVOR so a maximum distance for start and stop that I think is adjusted based on the SV size. So smaller...

Hi, I am not sure I am following. There is a section "Multi-Sample Calling / Combine parameters:" which lists the merging relevant parameters. The parameters are otherwise categorized for different...

I am honestly not sure I follow all the split bam logic. One reason is for sure that bcftools doesn't allow for differences in the start/ stop coordinates. Wheras this...

Dear Zhongqu, you need to run sniffles2 per sample. As you can see from the documentation --input expects a bam file. you might want to add --snf to record candidates...

Hey Tuan, thanks thats interesting :) . We will check that out. Cheers Fritz

Do you have python 3 installed ? Thx Fritz

ok my last guess: pysam ? Other than that we would need to look into what would cause this.. Thanks Fritz

Hi Mehmet, sorry this is currently not supported. You may be able to infer this by the number of supporting reads. Alternatively, you can use e.g. samtools depth to obtain...

Hi, no we haven't planned any extra steps nor experimented with this. Obviously, keep in mind that the genotypes will handle the sex chromosomes like it would be autosomes.. Please...