Fritz Sedlazeck

Thanks @Will-Tyler for reporting back! So what is not so intuitive is that the merge is performing another calling. So the non-qc in the single sample level doesnt matter because...

Thanks @Will-Tyler for reporting this. We are pushing some other things but will for sure keep an eye on this.

So you pointing at that the end position is +1 bp too long? @hermannromanek we can put a cross check in the output. Thanks Fritz

Dear @virginied33 thank you for the detailed report. I know that this region is very tricky to analzye which might also reflect some parts of your results. I wonder if...

Dear @lillianokok can you try without the tandem repeat file? I am just curious since the tandem repeat file probably doesnt match your reference and in general you dont need...

ok I am closing this. please let us know if there are any follow up questions. Thanks Fritz

Yeah so how it works is that reads are treated differently if they are split or not. For not right now its scanned for alignment events. For the case of...

Thanks @hermannromanek could you take a look?

Dear @yfarjoun Thanks. we are working on this. This is on me.. i wanted a development github that is private and this public facing github. so now Herman needs to...

Sorry no. The sample name is taken from the bam file. You could change it there and then rerun sniffles, which should be fast. Sorry Fritz