Fritz Sedlazeck

Hi, Yes we have a prototype. We are currently running multiple tests to see how it performs. If everything checks out we could put it online in the next 1-2...

Moritz is quite busy with exams, but we hope to push it soon. Cheers Fritz

Unfortunately, not much. Moritz has decided to not continue in comp biology. i just got a new lab member that hopefully takes over soon. Sorry for the inconvenience. Fritz

Hey Andrew, Agree and working on it. It will have a population mode where you get a fully genotyped VCF file out.. so should be easy then. Happy to hear...

Thanks @Davidseye so that depends a bit.. if you have a cell mix and expect low frequency SV (below 20% VAF in the sample) then you need to run mosaic...

Just to add, it also depends on how similar the SV are across the cells because we are doing a clustering step on the per read signal.. So if the...

I am closing this issue as its been resolved and silent for a while. thanks Fritz

Thanks Tam, may I ask if you know if this duplciation is tandem or interspersed duplciation ? That could make the difference here. CNV caller woudl call a region amplified...

Closing this since its inactive since a while. Thanks Fritz

Dear @annerilotter this is indeed a bit tricky i think.. So you want to produce a phased bam file that follows the phasign of the assebly right ? You could...