get tumor.only.vcf

[DayTimeMouse]

Hi,

Thanks for developing this awesome tools.

I haver already used sv caller to call paired tumor and normal samples vcf file.

Then, I'd like to use surviour to select the SVs that are only included in the tumor sample.

However, I can't understand which parameter should I choose.

Like,

ls *.vcf > sample_files 
samle_files:
normal.vcf
tumor.vcf

./SURVIVOR merge sample_files 1000 1 0 0 0 30 sample_merged.vcf

Then SUPP=1 means only occured in one vcf? And "./.:NaN:0:0,0:--:NaN:NaN:NaN:NAN:NAN:NAN" means this vcf is not called?

Could you provide me with scripts to separately filter out the VCF file containing SVs that appear only in the Tumor sample and the file containing shared SVs?

Best wishes.