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Published 20 hours ago • verified publisher icon fritzsedlazeck

merge error

Open Qijie0615 opened this issue 1 year ago • 0 comments

These two variations were found in four samples, and when I only used this four-sample vcf to merge, these two variations could be merged into one correctly. However, when I merged with a population (vcf with 4000 samples), these two mutations could not be merged into one. SURVIVOR merge DEL_FileList.list 1000 1 1 1 0 0 repeat.DEL.vcf Looking forward to your reply！

chr8 84700770 DEL_3417 N <DEL> 591 PASS SUPP=1;SVLEN=-36499;SVTYPE=DEL;SVMETHOD=SURVIVOR1.0.7;CHR2=chr8;END=84737242;CIPOS=0,0;CIEND=0,0;STRANDS=+-
chr8 84700556 DEL_3914 N <DEL> 999 PASS SUPP=3;SVLEN=-36602;SVTYPE=DEL;SVMETHOD=SURVIVOR1.0.7;CHR2=chr8;END=84737218;CIPOS=0,281;CIEND=0,0;STRANDS=+-

Qijie0615 avatar Aug 28 '23 03:08 Qijie0615