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Published 20 hours ago • verified publisher icon fritzsedlazeck

vcftobed conversion

Open priyambial123 opened this issue 1 year ago • 0 comments

Hello

To get the correct coordinates in the bed file, what is the minimum and maximum size to be specified in the code. The vcf dataset has structural variants, each spanning several base pairs.

./SURVIVOR vcftobed file _"/cohorts/bipolar_rerun_secondcleanup/pbsv/rerun_secondcleanup.GRCh38.pbsv.bed2.vcf" "/cohorts/rerun_secondcleanup/pbsv/GRCh38.pbsv.vcf.bed"

Thank you

priyambial123 avatar Mar 24 '23 09:03 priyambial123