Frederik Ziebell

Animation fails when transient values are converted to strings

1

This works as expected: ``` tibble(i=1:3) %>% ggplot(aes(x=0, y=0)) + geom_text(aes(label=i)) + transition_time(i) ```  however, this fails: ``` tibble(i=1:3) %>% ggplot(aes(x=0, y=0)) + geom_text(aes(label=paste0("value: ", i))) + transition_time(i) ```...

no heatmap is shown when scales of x and y axis are very different

3

This ``` set.seed(1) tibble( x = runif(1e5,max=10), y = rnorm(1e5, sd=1e-4) ) %>% ggplot(aes(x,y)) + ggpointdensity::geom_pointdensity() ``` results in: Does ggpointdensity compute the neighborhood-radius relative to the dynamic range of...

Missing default random seed in RunHarmony()

1

`RunHarmony()` does not have a default random seed defined, e.g. consinder ``` library("Seurat") pbmc_test

Support binary metric

2

For binary data, it would be helpful to support the binary metric as implemented in `dist(metric="binary")`. Currently, the only way is to pass the `dist` object directly, which is very...

I have been working on creating a Docker image that allows to run MOFA2 in GPU mode. Here's the modified Dockerfile that can be used to create the image ```...

The documentation of `plot_factors()` says _a vector of length two with the factors to plot. Factors can be specified either as a characters_. I'd suggest to change it to _a...

Truncation of very long features names can lose uniqueness

2

Here's an example ``` file

Error in get_residuals(), 'log_umi' not found

1

Running ``` vst_out

Add inverse hyperbolic sine transformation

1

Sometimes it's nice to have a 'log'-transformation that also works for negative values to have points more evenly spread-out: ``` ihs

Online version: List of contents cannot be hidden

1

When viewing the online version of the book from a mobile device like a tablet, the list of contents is relatively wide and cannot be hidden, see [here](http://i.imgur.com/qQeXV2D.jpg).