Only Payment Entries that book advance in Advance account are supported in Payment Reconciliation Tool - Manual Journal Entries should be supported too.

[pujanthakkar]

Currently for "Advance" Paid by Payment Entry are only shown in Payment Reconciliation tool for matching with Outstanding Invoices. However Journal Entry for Advances paid manually are not supported. They should be included in the tool so that they can be settled with outstanding Invoices.

[Botanium]

I am facing this issue as well. I have migrated from V14 to V15 and as per the customers requirements, they wanted open balance instead of migration. Now I have transferred all the Advance Payments as JV, but the system gives me a message box showing that I wont be able to fetch these advance payments in the invoices or the reconciliation tool. Without this feature the system can't cover full transfer for opening balance.