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[Bug]: Metawrap Installation failure
Hello!
I am trying to install metaGEM using the instructions provided in https://github.com/franciscozorrilla/metaGEM/blob/master/config/README.md
I have managed to get everything installed up until section 3, metawrap.
When running conda create -n metawrap metawrap-mg
, I get the following error:
LibMambaUnsatisfiableError: Encountered problems while solving:
-package metawrap-mg-1.3.0-hdfd78af_0 requires biopython 1.68.*, but none of the providers can be installed
I have then tried the alternative installation mamba env create --prefix ./envs/metawrap -f envs/metaWRAP_env.yml
, and get:
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
Could not solve for environment specs The following packages are incompatible ├─ metawrap-mg >=1.2.3 is not installable because there are no viable options │ ├─ metawrap-mg [1.2.3|1.3.0|1.3.1|1.3.2] would require │ │ └─ maxbin2 2.2.6.* , which conflicts with any installable versions previously reported; │ └─ metawrap-mg 1.3.0 conflicts with any installable versions previously reported; └─ r-ggplot2 is not installable because there are no viable options ├─ r-ggplot2 2.2.1 would require │ └─ r-reshape2 but there are no viable options │ ├─ r-reshape2 [1.4.2|1.4.3|1.4.4] would require │ │ └─ r-stringr but there are no viable options │ │ ├─ r-stringr 1.1.0 would require │ │ │ └─ r 3.3.1* , which conflicts with any installable versions previously reported; │ │ ├─ r-stringr [1.0.0|1.1.0|...|1.5.1] conflicts with any installable versions previously reported; │ │ ├─ r-stringr 1.0.0 would require │ │ │ └─ r-base 3.2.1* , which does not exist (perhaps a missing channel); │ │ ├─ r-stringr 1.0.0 would require │ │ │ └─ r-base 3.2.0* , which does not exist (perhaps a missing channel); │ │ └─ r-stringr 1.0.0 would require │ │ └─ r-base 3.2.2* , which does not exist (perhaps a missing channel); │ ├─ r-reshape2 [1.4.1|1.4.2|1.4.3|1.4.4] conflicts with any installable versions previously reported; │ ├─ r-reshape2 1.4.1 would require │ │ └─ r-base 3.2.1* , which does not exist (perhaps a missing channel); │ ├─ r-reshape2 1.4.1 would require │ │ └─ r-base 3.2.0* , which does not exist (perhaps a missing channel); │ └─ r-reshape2 1.4.1 would require │ └─ r-base 3.2.2* , which does not exist (perhaps a missing channel); ├─ r-ggplot2 [2.0.0|2.1.0] would require │ └─ r 3.2.2* , which does not exist (perhaps a missing channel); ├─ r-ggplot2 [2.1.0|2.2.0] would require │ └─ r 3.3.1* , which conflicts with any installable versions previously reported; ├─ r-ggplot2 2.2.1 would require │ └─ r-base 3.3.1* , which requires │ └─ icu 54.* , which does not exist (perhaps a missing channel); ├─ r-ggplot2 [2.1.0|2.2.0|...|3.4.4] conflicts with any installable versions previously reported; ├─ r-ggplot2 1.0.1 would require │ └─ r-base 3.2.1* , which does not exist (perhaps a missing channel); ├─ r-ggplot2 1.0.1 would require │ └─ r-base 3.2.0* , which does not exist (perhaps a missing channel); └─ r-ggplot2 1.0.1 would require └─ r-base 3.2.2* , which does not exist (perhaps a missing channel).
conda config --show channels
gives me:
channels:
- conda-forge
- bioconda
- defaults
Am I missing a particular channel? Any advice would be greatly appreciated, thank you!