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feature: support single batch gtdbtk classification

Open franciscozorrilla opened this issue 1 year ago • 0 comments

🩻 Single batch submission of GTDBTk-based taxonomic classification 🚀

Current GTDBTk rule is great when dealing with many metagenomes, but when dealing with many isolate samples it makes more sense to follow this subworkflow task.

🐍 Snakefile tasks

  • [x] create GTDBTk_singlerun for single job submission of small number of genomes

🔨 Additional modifications for full integration/support

  • [ ] metaGEM.sh: add options + support for new tasks, helpfile message
  • [ ] main readme: update helpfile message

franciscozorrilla avatar Jun 09 '23 16:06 franciscozorrilla