metaGEM
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feature: support single batch gtdbtk classification
🩻 Single batch submission of GTDBTk-based taxonomic classification 🚀
Current GTDBTk rule is great when dealing with many metagenomes, but when dealing with many isolate samples it makes more sense to follow this subworkflow task.
🐍 Snakefile tasks
- [x] create GTDBTk_singlerun for single job submission of small number of genomes
🔨 Additional modifications for full integration/support
- [ ] metaGEM.sh: add options + support for new tasks, helpfile message
- [ ] main readme: update helpfile message