metaGEM
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feature: add support for eggnog-mapper
🥚 eggNOG-mapper for better functional annotation 🍸
🐍 Snakefile tasks
- [x] create eggnog-mapper rule for processing ORF-annotated protein fasta files of genomes
- [ ] create helper/supplementary rule to deal with large number of genomes (e.g. per sample submission of jobs)
🔨 Additional modifications for full integration/support
- [ ] metaGEM.sh: add options + support for new tasks
- [ ] config.yaml: add params used in new tasks
- [ ] config readme file: eggnog-mapper could go in main metaGEM env
- [ ] conda recipe: update
- [ ] main readme file: text and eventually figure