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feature: add support for eggnog-mapper

Open franciscozorrilla opened this issue 1 year ago • 0 comments

🥚 eggNOG-mapper for better functional annotation 🍸

🐍 Snakefile tasks

  • [x] create eggnog-mapper rule for processing ORF-annotated protein fasta files of genomes
  • [ ] create helper/supplementary rule to deal with large number of genomes (e.g. per sample submission of jobs)

🔨 Additional modifications for full integration/support

  • [ ] metaGEM.sh: add options + support for new tasks
  • [ ] config.yaml: add params used in new tasks
  • [ ] config readme file: eggnog-mapper could go in main metaGEM env
  • [ ] conda recipe: update
  • [ ] main readme file: text and eventually figure

franciscozorrilla avatar Jun 09 '23 15:06 franciscozorrilla