Bayesian Multi-Trait Multi-Environment | Development version 1.0.19

[Last README update: 2020-08-26]

Table of contents

• NEWS
  • Instructions
    • Installation
    • Dataset
  • How to cite this package
  • Contributions
  • Authors

News of this version (1.0.19)

See the last updates on NEWS.

Instructions for proper implementation

Installation

To complete installation of dev version of BMTME from GitHub, you have to install Rtools Software and a few packages first.

install.packages('devtools')
devtools::install_github('frahik/BMTME')

Datasets

The package include 6 sample datasets

To load one dataset, use the function data(datasetName)

How to cite this package

First option, by the article paper

@article {Montesinos-L{\'o}pez1355,
    author = {Montesinos-L{\'o}pez, Osval A. and Montesinos-L{\'o}pez, Abelardo and Luna-V{\'a}zquez, Francisco Javier and Toledo, Fernando H. and P{\'e}rez-Rodr{\'\i}guez, Paulino and Lillemo, Morten and Crossa, Jos{\'e}},
    title = {An R Package for Bayesian Analysis of Multi-environment and Multi-trait Multi-environment Data for Genome-Based Prediction},
    volume = {9},
    number = {5},
    pages = {1355--1369},
    year = {2019},
    doi = {10.1534/g3.119.400126},
    publisher = {G3: Genes, Genomes, Genetics},
    URL = {https://www.g3journal.org/content/9/5/1355},
    eprint = {https://www.g3journal.org/content/9/5/1355.full.pdf},
    journal = {G3: Genes, Genomes, Genetics}
}

Second option, by the manual package

citation('BMTME')

## 
## To cite package 'BMTME' in publications use:
## 
##   Francisco Javier Luna-Vazquez, Fernando H. Toledo, Osval Antonio
##   Montesinos-Lopez, Abelardo Montesinos-Lopez and Jose Crossa (2020).
##   BMTME: Bayesian Multi-Trait Multi-Environment for Genomic Selection
##   Analysis. R package version 1.0.19. https://github.com/frahik/BMTME
## 
## A BibTeX entry for LaTeX users is
## 
##   @Manual{,
##     title = {BMTME: Bayesian Multi-Trait Multi-Environment for Genomic Selection Analysis},
##     author = {Francisco Javier Luna-Vazquez and Fernando H. Toledo and Osval Antonio Montesinos-Lopez and Abelardo Montesinos-Lopez and Jose Crossa},
##     year = {2020},
##     note = {R package version 1.0.19},
##     url = {https://github.com/frahik/BMTME},
##   }

Contributions

If you have any suggestions or feedback, I would love to hear about it. Feel free to report new issues in this link, also if you want to request a feature/report a bug, or make a pull request if you can contribute.

Research and implementations

• An R Package for Bayesian Analysis of Multi-environment and Multi-trait Multi-environment Data for Genome-Gased Prediction
• A Bayesian Multiple-Trait and Multiple-Environment Model Using the Matrix Normal Distribution

Authors

• Francisco Javier Luna-Vázquez (Author, Maintainer)
• Osval Antonio Montesinos-López (Author)
• Abelardo Montesinos-López (Author)
• José Crossa (Author)
• Fernando Tolero (Author)