François Michonneau

need more info about dataset

1

on the workshop page, there should be a link to the figshare page with all the data (including its different formats/flavors, e.g., the CSV file used in the R lesson)...

It would be very useful to create a template for the schedule of a geospatial workshop to be used in the workshop website. This schedule should be added to this...

List of reproducible studies that could potentially be used in the lesson

2

**Feel free to edit this comment with additional references** - [uniqTag](http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0128026), GitHub Repo: https://github.com/sjackman/uniqtag-paper - [BAAD](http://www.esajournals.org/doi/abs/10.1890/14-1889.1) (BAAD: a Biomass And Allometry Database for woody plant). GitHub repo: https://github.com/dfalster/baad/ - [Paleontological...

FR: provide context for warnings

2

Currently, any warnings generated during the build process are gathered and displayed at the end. However (and especially when using remake for complex projects with many targets), it can be...

don't allow the use of targets made available by create_bindings() during knitting

2

I don't know if it's technically possible, but I noticed that if I knit a manuscript after invoking `create_bindings()`, then it will use the target in memory even if they...

manuscript not rebuilt when figures updated

2

let's say I have this as `remake.yml` ```yaml all: depends: manuscript.pdf figures: depends: - figure1.pdf - figure2.pdf figure1.pdf: command: make_figure1() plot: true figure2.pdf: command: make_figure2() plot: true manuscript.md: knitr: true...

allow knitr targets to depend on target aliases

1

Maybe I'm not thinking about this correctly, but It seems that it would be useful to support dependencies "aliases" in the knitr targets to avoid repetition. See `processed_data` in the...

I had a target with: ``` yaml figures/plot1.pdf: command: make_figure_1() plot: true ``` that I updated to ``` yaml figures/plot1.pdf: command: make_figure_1() plot: width: 12 height: 8 ``` but that...

You have file 'rotl/man/rotl.Rd' with \docType{package}, likely intended as a package overview help file, but without the appropriate PKGNAME-package \alias as per "Documenting packages" in R-exts. This seems to be...

do we need to lowercase the string provided by user in tnrs_match_names?

4

`tnrs_match_names` lowercases the string provided by the user in the results, do we need to do this?