Felipe Marques de Almeida

Generating a new branch to tackle this issue that seems to be related to the shiny app.

> Just saw there's already a pr for this! > > * [adding scanpy conda-forge mulled BioContainers/multi-package-containers#2209](https://github.com/BioContainers/multi-package-containers/pull/2209) I’ve opened it earlier today as a workaround. But don’t know if the...

Is this related to what's happening in PR #153 ?

#91 is set 😄

I have the same issue here. However the step is running for more than a day. I have even tried the parameter `-nsl`but it seems that the pipeline have ignored...

Hi @grst , Started running the tool with public data to get the gist of the tool and figure out how to work with the "input csv" for proper implementation.

Using this issue for backup of TODO existing in the implementation of multi-omics analyses. Here, for the `FFPE`, related to PR #276 - [ ] Discussion [here](https://github.com/nf-core/scrnaseq/pull/276#discussion_r1565381001) about the simplification...