bacannot
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add tool: f5c (methylation)
Add to the pipeline the new tool called f5c which is a reimplementation of Nanopolish
and is much faster. Add this tool, but not replace nanopolish. Instead, make the pipeline run f5c
or Nanopolish
(or both) depending on user's desire, with something like: --nanopolish_fast5 <fast5 dir>
to run with Nanopolish
or --f5c_fast5 <fast5 dir>
to run with f5c.
Finally, add a report for methylations with pycoMeth