bacannot
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add a sourmash module
Add an additional module for scanning the sample using sourmash:
- [x] scan against refseq using whole genome (LCA)
- [x] an option to create a simple phylogeny using sourmash against the N closest genomes detected in the pipeline using
refseq_masher
module or against genomes provided by user in a directory - [ ] Include results in HTML reports
Just missing addition in the reports.
Module working fine in workflow. HTML reports containing desired results. Missing:
- [x] publish docker image
- [x] generating and publishing new pre-built database
- [x] updating HTML reports examples in documentation for new ones with sourmash
Finally opened PR for final review before releasing: https://github.com/fmalmeida/bacannot/pull/125