Philipp A. issues

Results 411 issues of


                                            Philipp A.

TOML formatting

This question if there is one still doesn’t seem exhaustively answered: https://github.com/toml-lang/toml/issues/532 prettier-plugin-toml doesn’t seem to be good enough, see #211 The most promising option right now seems to be:...

enhancement

add taplo formatting

Fixes #212, finally! Works, but is still a draft, since the used hook is currently preliminary: https://github.com/ComPWA/mirrors-taplo/issues/13#issuecomment-1930749688

consider adding more checks

After switching to Ruff in #147, we basically get a bunch of checks for free (runtime-wise and configuration-wise) We should consider adding more! - [flake8-use-pathlib (`PTH`)](https://beta.ruff.rs/docs/rules/#flake8-use-pathlib-pth) - [pep8-naming (`N`)](https://beta.ruff.rs/docs/rules/#pep8-naming-n) -...

Extract custom sphinx stuff to package

#100 did this: > - Remove scanpydoc dependency > - Add typed returns custom extension like in scanpy > - Use same autosummary class template as in scvi-tools (single page...

Improve handling around stale metadata

Continuation of the discussion in #106. In summary: 1. Using project metadata in locally checked out Python projects always has the issue that a project installed in development mode (`pip...

Validate RST docstrings

Before switching to Ruff in #147, we used [flake8-rst-docstrings](https://github.com/peterjc/flake8-rst-docstrings), which hasn’t been implemented in Ruff at the time of writing. Me might want to consider a replacement. ```toml rst-roles =...

Switch to leiden

see https://github.com/theislab/scanpy/issues/1283#issuecomment-645269898 @LuckyMD we should change the tutorials instead of going back, because [louvain is deprecated](https://github.com/vtraag/louvain-igraph/blob/b3a8e6be2c3916e4082e8171a31e8752317e4c5c/src/__init__.py#L63-L66): > This package has been superseded by the `leidenalg` package and will no longer...

enhancement

good first issue

Philipp A.