DHARMa
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DHARMa: fittedModel not in class of supported models for a glmmTMB model
Hi, I was trying to correct a warning message from DHARMa: Warning message: In simulateResiduals(fittedModel = m2) :DHARMa: fittedModel not in class of supported models. Absolutely no guarantee that this will work!
For this model:
m1<-glmmTMB(NPQ ~ Temp*LUZ*Tiempo + (1|ID) + (1|Intensidad), data=dp, family=beta_family(link="logit"), ziformula= ~(1|Intensidad))
Despite installing the current (development) version from this repository. (devtools::install_github(repo = "florianhartig/DHARMa", subdir = "DHARMa", dependencies = T
) the warning keeps appearing and the plot does not appear, but says: Error in xy.coords(x, y, xlabel, ylabel, log) : 'x' is a list, but does not have components 'x' and 'y'
I have checked other models that used to work fine with DHARMa and now I get the same warning and error,
Unfortunately my other computer was stolen and I don't know what version of DHARMa I had, but with this version installed it should work.
This code: devtools::install_github(repo = "florianhartig/DHARMa", subdir = "DHARMa", dependencies = T, build_vignettes = T)
gives me this error:Error: Vignette re-building failed. Execution halted Error: Failed to install 'DHARMa' from GitHub: Failed to install 'glmmTMB' from GitHub: ! System command 'R' failed ding ‘troubleshooting.rmd’
only runs the installation omitting: build_vignettes = T
, maybe that's the problem!!
My R version: R 4.4.0 GUI 1.80 Big Sur ARM build in macOS 13.0
If anyone has any recommendations or help, I would appreciate it.
THANKS!! ;)