Franz Liem

I can confirm that resuming does not lead to this problem

Mhh. I have a vague memory of @satra heading a past brainhack project about FS QA?

Since surface plots now arrived in nilearn, and creating qc plots for freesurfer is such a drag, I suggest we revive this issue. As a starting point I have created...

Those look very pretty. @effigies could you please point me towards that fmriprep code. Did you do other things for qc as well (like calculating metrics...)? Thanks.

I have refined the [surface and subcortical plots](https://github.com/fliem/freesurfer/blob/qc_nb/notebooks/fs_qc_plots.ipynb), borrowing heavily from nilearn/niworkflows. Next, I'll look into how to assemble them in htmls

I have created first examples for single subjects and group html [reports](https://github.com/fliem/freesurfer/tree/qc_nb/example_reports/00_qc). Any suggestions?

* re misalignment: this was partially due to a bug in the code. However after fixing this, the contours still don't align perfectly. I have reverted to ROI overlays for...

Sorry, I can't figure out why the parcellations won't show. Here's one of them: 

I'd also be interested in seeing that & could implement it.