BioSolr
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flaxsearch
A project aiming "to significantly advance the state of the art with regard to indexing and querying biomedical data with freely available open source software"
It would be great to be able to sort results in the response by an xjoin value - eg. something like `sort=xjoin(fieldname) desc`.
Bumps [json-smart](https://github.com/netplex/json-smart-v2) from 2.3 to 2.4.9. Release notes Sourced from json-smart's releases. V 2.4.9 V 2.4.9 (2023-03-07) Add depth limit of 400 when parsing JSON. What's Changed allow config init...
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Bumps solr-core from 7.2.1 to 8.8.2. [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a...
Bumps [elasticsearch](https://github.com/elastic/elasticsearch) from 1.7.1 to 6.8.17. Release notes Sourced from elasticsearch's releases. Elasticsearch 6.8.17 Downloads: https://elastic.co/downloads/elasticsearch Release notes: https://www.elastic.co/guide/en/elasticsearch/reference/6.8/release-notes-6.8.17.html Elasticsearch 6.8.16 Downloads: https://elastic.co/downloads/elasticsearch Release notes: https://www.elastic.co/guide/en/elasticsearch/reference/6.8/release-notes-6.8.16.html Elasticsearch 6.8.15 Downloads: https://elastic.co/downloads/elasticsearch...
Bumps solr-core from 8.4.1 to 8.8.2. [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a...
Bumps solr-core from 8.4.1 to 8.8.2. [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a...
Bumps lucene-core from 4.10.4 to 7.1.0. [](https://help.github.com/articles/configuring-automated-security-fixes) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a...
While trying to do a MavenBuild for Ontology-Annotator-Core project. I hit with this error Exception in thread "main" java.lang.NoClassDefFoundError: com/google/common/base/Strings at org.sonatype.nexus.maven.staging.deploy.DeployLifecycleParticipant.getPluginByGAFromContainer(DeployLifecycleParticipant.java:238) at org.sonatype.nexus.maven.staging.deploy.DeployLifecycleParticipant.getNexusMavenPluginFromContainer(DeployLifecycleParticipant.java:182) at org.sonatype.nexus.maven.staging.deploy.DeployLifecycleParticipant.getBuildPluginsNexusMavenPlugin(DeployLifecycleParticipant.java:163) at org.sonatype.nexus.maven.staging.deploy.DeployLifecycleParticipant.afterProjectsRead(DeployLifecycleParticipant.java:95) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:266)...
From documentation we see that ontology is added to an existing document as special field of type "Ontology". I try to map an OWL ontology with ver 2.2 of the...
sequence search using phmmer fails I believe because phmmer has moved to https by default. The query returns "error": { "msg": "Server returned HTTP response code: 400 for URL: https://www.ebi.ac.uk/Tools/hmmer/search/phmmer",...
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A project aiming "to significantly advance the state of the art with regard to indexing and querying biomedical data with freely available open source software"