Running volpy on linescans

[m-bellv]

Hello, I am using Linux with Python 3.8.8 on Spyder 4.2.5. I installed CaImAn (version 1.9.2) using the pip install -e . method.

I'm interested in using the demo_pipeline_voltage_imaging.py script, specifically to look at line scans as opposed to xy scans. Is it possible to run VolPy on the raw trace bypassing the segmentation step?

[j-friedrich]

@m-bellv, not sure I understand, do you already have a noisy temporal trace for each neuron, instead of a noisy fluorescence trace for each pixel? If you want to denoise the temporal trace of each neuron you can run denoise_spikes on each trace.